This function processes alternative experiments (altExps) in the SingleCellExperiment object.
If altExps are found, they are processed recursively and stored in the `uns` slot of the AnnData object.
Usage
process_alt_experiments(sce, assayName, useAltExp)
Arguments
- sce
A SingleCellExperiment object.
- assayName
The name of the assay to use as the main data matrix in AnnData.
- useAltExp
Logical indicating whether to process and include alternative experiments (altExps).
Value
A list containing the updated SingleCellExperiment object and the altExps data.