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This function processes alternative experiments (altExps) in the SingleCellExperiment object. If altExps are found, they are processed recursively and stored in the `uns` slot of the AnnData object.

Usage

process_alt_experiments(sce, assayName, useAltExp)

Arguments

sce

A SingleCellExperiment object.

assayName

The name of the assay to use as the main data matrix in AnnData.

useAltExp

Logical indicating whether to process and include alternative experiments (altExps).

Value

A list containing the updated SingleCellExperiment object and the altExps data.