Extract obsm embeddings from an AnnData object — extract_anndata

Returns a named list of numeric matrices, one per `adata$obsm` key. Each matrix has rows in `obs_names` order. Non-numeric or dimension-mismatched entries are skipped with a warning.

Usage

extract_anndata_obsm(adata, obs_names = NULL)

Arguments

adata: An AnnData object.
obs_names: Character vector of cell names; used both for sanity-checking row count and for setting rownames.

Value

A named list of numeric matrices (cells x dim).