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Default mapping from AnnData obsm keys to Seurat reduction (name, key) pairs

Source: R/attach_reductions_seurat.R
default_reduction_map.Rd

Provides the canonical Seurat naming for the obsm keys conventionally produced by scanpy. Users who want extra mappings should pass a list with the same shape into `attach_reductions_seurat()` (or its callers).

Usage

default_reduction_map()

Value

A named list. Each name is an obsm key (e.g. `X_pca`); each element is a list with `name` (Seurat reduction name, e.g. `"pca"`) and `key` (column-name prefix, e.g. `"PC_"`).