Convert Seurat Graph to colPair-Compatible Format

This function converts a graph (adjacency matrix or edge list) into a format compatible with the `colPair` slot in a `SingleCellExperiment` object. The graph must match the cell indices or names in the `SingleCellExperiment` object.

Usage

convert_graph_to_colPair(graph, colnames_sce)

Arguments

graph

A graph represented as either a square adjacency matrix, distance matrix, or an edge list (data frame or two-column matrix).

colnames_sce

A character vector of cell names from the `colData` of the `SingleCellExperiment` object. Used to map the graph indices to the correct cell names.

Value

A `SelfHits` object compatible with the `colPair` slot in `SingleCellExperiment`.