Package index • convert2anndata

All functions

align_metadata_seurat(): Align Metadata to Cell Names in Seurat Object

attach_alt_experiments_sce(): Attach altExps to SingleCellExperiment Object

cli_convert(): Command Line Interface for convert2anndata

convert_commands(): Convert SeuratCommand objects into a serializable format

convert_graph_to_colPair(): Convert Seurat Graph to colPair-Compatible Format

convert_seurat_to_sce(): Convert Seurat or Other Object to SingleCellExperiment

convert_to_anndata(): Convert SingleCellExperiment to AnnData

create_combined_assay(): Create Combined Assay in Seurat Object

ensure_csparse_matrix(): Ensure Sparse Matrix is in a Format Compatible with AnnData

extract_counts_matrix(): Extract Counts Matrix from Seurat Assay

extract_data(): Extract Data from SingleCellExperiment

extract_pairs(): Extract Pairwise Data from SingleCellExperiment

identify_alt_exps_seurat(): Identify Assays to Move to altExps in Seurat Object

preserve_reductions_seurat(): Preserve Dimensional Reductions from Seurat Object

process_alt_experiments(): Process Alternative Experiments

process_dimensional_reductions(): Process Dimensional Reductions

process_layers(): Process Layers in Seurat Assay

process_main_assay(): Process Main Assay

process_metadata_and_pairwise(): Process Metadata and Pairwise Matrices

process_other_assays(): Process Other Assays

timestamped_cat(): Print Messages with Timestamp

update_seurat_object(): Update Seurat Object if Necessary